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@@ -1 +1 @@
-6996af12
+bfa14f8d

index.html

@@ -189,9 +189,9 @@ <h2 class="anchored" data-anchor-id="set-up-the-environment">Set up the environm
 <span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(ggbreak)</span>
 <span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a><span class="fu">library</span>(cowplot)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </div>
-<p>Create a file named <code>.env.sh</code> and add your GitHub PAT (variable named <code>PAT</code> ) and google api key (named <code>GOOGLE_API_KEY</code>) in there, e.g.:</p>
+<p>Create a file named <code>.env</code> and add your GitHub PAT (variable named <code>PAT</code> ) and google api key (named <code>GOOGLE_API_KEY</code>) in there, e.g.:</p>
 <div class="cell">
-<div class="sourceCode cell-code" id="cb2"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="co"># this is an example, store it as .env.R:</span></span>
+<div class="sourceCode cell-code" id="cb2"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="co"># this is an example, store it as .env:</span></span>
 <span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a><span class="bu">export</span> <span class="va">AT</span><span class="op">=</span><span class="st">"ghp_aRSRESCTZII20Lklser3H"</span></span>
 <span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a><span class="bu">export</span> <span class="va">GOOGLE_API_KEY</span><span class="op">=</span><span class="st">"AjKSLE5SklxuRsxwPP8s0"</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </div>

search.json

@@ -4,14 +4,14 @@
     "href": "index.html",
     "title": "Glittr stats",
     "section": "",
-    "text": "Loading required packages.\n\nlibrary(httr2)\nlibrary(ggplot2)\nlibrary(dplyr)\nlibrary(ggbreak)\nlibrary(cowplot)\n\nCreate a file named .env.sh and add your GitHub PAT (variable named PAT ) and google api key (named GOOGLE_API_KEY) in there, e.g.:\n\n# this is an example, store it as .env.R:\nexport AT=\"ghp_aRSRESCTZII20Lklser3H\"\nexport GOOGLE_API_KEY=\"AjKSLE5SklxuRsxwPP8s0\"\n\nNow source this file to get the keys as objects:\n\nsource .env\n\nGet environment variables as R objects:\n\npat <- Sys.getenv(\"PAT\")\ngoogle_api_key <- Sys.getenv(\"GOOGLE_API_KEY\")\n\nSetting colors. These are the same colors as on glittr.org.\n\nglittr_cols <- c(\n  \"Scripting and languages\" =             \"#3a86ff\",\n  \"Computational methods and pipelines\" = \"#fb5607\",\n  \"Omics analysis\" =                      \"#ff006e\",\n  \"Reproducibility and data management\" = \"#ffbe0b\",\n  \"Statistics and machine learning\" =     \"#8338ec\",\n  \"Others\" =                              \"#000000\")"
+    "text": "Loading required packages.\n\nlibrary(httr2)\nlibrary(ggplot2)\nlibrary(dplyr)\nlibrary(ggbreak)\nlibrary(cowplot)\n\nCreate a file named .env and add your GitHub PAT (variable named PAT ) and google api key (named GOOGLE_API_KEY) in there, e.g.:\n\n# this is an example, store it as .env:\nexport AT=\"ghp_aRSRESCTZII20Lklser3H\"\nexport GOOGLE_API_KEY=\"AjKSLE5SklxuRsxwPP8s0\"\n\nNow source this file to get the keys as objects:\n\nsource .env\n\nGet environment variables as R objects:\n\npat <- Sys.getenv(\"PAT\")\ngoogle_api_key <- Sys.getenv(\"GOOGLE_API_KEY\")\n\nSetting colors. These are the same colors as on glittr.org.\n\nglittr_cols <- c(\n  \"Scripting and languages\" =             \"#3a86ff\",\n  \"Computational methods and pipelines\" = \"#fb5607\",\n  \"Omics analysis\" =                      \"#ff006e\",\n  \"Reproducibility and data management\" = \"#ffbe0b\",\n  \"Statistics and machine learning\" =     \"#8338ec\",\n  \"Others\" =                              \"#000000\")"
   },
   {
     "objectID": "index.html#set-up-the-environment",
     "href": "index.html#set-up-the-environment",
     "title": "Glittr stats",
     "section": "",
-    "text": "Loading required packages.\n\nlibrary(httr2)\nlibrary(ggplot2)\nlibrary(dplyr)\nlibrary(ggbreak)\nlibrary(cowplot)\n\nCreate a file named .env.sh and add your GitHub PAT (variable named PAT ) and google api key (named GOOGLE_API_KEY) in there, e.g.:\n\n# this is an example, store it as .env.R:\nexport AT=\"ghp_aRSRESCTZII20Lklser3H\"\nexport GOOGLE_API_KEY=\"AjKSLE5SklxuRsxwPP8s0\"\n\nNow source this file to get the keys as objects:\n\nsource .env\n\nGet environment variables as R objects:\n\npat <- Sys.getenv(\"PAT\")\ngoogle_api_key <- Sys.getenv(\"GOOGLE_API_KEY\")\n\nSetting colors. These are the same colors as on glittr.org.\n\nglittr_cols <- c(\n  \"Scripting and languages\" =             \"#3a86ff\",\n  \"Computational methods and pipelines\" = \"#fb5607\",\n  \"Omics analysis\" =                      \"#ff006e\",\n  \"Reproducibility and data management\" = \"#ffbe0b\",\n  \"Statistics and machine learning\" =     \"#8338ec\",\n  \"Others\" =                              \"#000000\")"
+    "text": "Loading required packages.\n\nlibrary(httr2)\nlibrary(ggplot2)\nlibrary(dplyr)\nlibrary(ggbreak)\nlibrary(cowplot)\n\nCreate a file named .env and add your GitHub PAT (variable named PAT ) and google api key (named GOOGLE_API_KEY) in there, e.g.:\n\n# this is an example, store it as .env:\nexport AT=\"ghp_aRSRESCTZII20Lklser3H\"\nexport GOOGLE_API_KEY=\"AjKSLE5SklxuRsxwPP8s0\"\n\nNow source this file to get the keys as objects:\n\nsource .env\n\nGet environment variables as R objects:\n\npat <- Sys.getenv(\"PAT\")\ngoogle_api_key <- Sys.getenv(\"GOOGLE_API_KEY\")\n\nSetting colors. These are the same colors as on glittr.org.\n\nglittr_cols <- c(\n  \"Scripting and languages\" =             \"#3a86ff\",\n  \"Computational methods and pipelines\" = \"#fb5607\",\n  \"Omics analysis\" =                      \"#ff006e\",\n  \"Reproducibility and data management\" = \"#ffbe0b\",\n  \"Statistics and machine learning\" =     \"#8338ec\",\n  \"Others\" =                              \"#000000\")"
   },
   {
     "objectID": "index.html#parse-repository-data",

sitemap.xml

@@ -2,6 +2,6 @@
 <urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9">
   <url>
     <loc>https://sib-swiss.github.io/glittr-stats/index.html</loc>
-    <lastmod>2024-04-09T09:26:29.325Z</lastmod>
+    <lastmod>2024-04-09T09:31:09.568Z</lastmod>
   </url>
 </urlset>