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cnvkit

Here are 4 public repositories matching this topic...

XUKEREN / phd-pipeline

Some workflows I wrote for my phd projects

bioinformatics gatk variant-calling copy-number-variation eqtl structural-variation mutational-signatures mqtl ewas epigentics cnvkit

Updated Jul 30, 2023
Shell

homijan / apm-cnv

CNV callers for cfDNA

r canary python3 ichorcna cnvkit wisecondor

Updated May 14, 2022
Python

aliciapalominomosquera / apm-cnv

CNV callers for cfDNA

r canary python3 ichorcna cnvkit wisecondor

Updated Nov 10, 2022
Python

pedricolino / cnakepit

A Snakemake pipeline for copy number variant calling without normal tissue samples

bioinformatics snakemake conda cnv bwa panels cna mutect2 targeted-sequencing sequencing-data cnvkit copynumbervariation purecn

Updated Dec 18, 2024
Python

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