DavideBrex / SpikeFlow Star 10 Code Issues Pull requests Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization bioinformatics snakemake bioinformatics-pipeline chip-seq snakemake-workflows normalisation spike-ins Updated Sep 9, 2024 Python
mghotbi / DspikeIn Star 9 Code Issues Pull requests Discussions The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package visualization phylogenetic-trees transformation gene-copies amplicon-sequencing qiime2 quantifying whole-cell spike-ins absolute-abundances Updated Jan 10, 2025 R
oicr-gsi / ercc Star 1 Code Issues Pull requests workflow for analysis of samples with RNA spike-ins (ERCC) workflow rna-seq reporting qc spike-ins Updated Jun 27, 2024 WDL