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Enh/neuropixels 6 #38

Closed
wants to merge 82 commits into from
Closed

Enh/neuropixels 6 #38

wants to merge 82 commits into from

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mochic
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@mochic mochic commented Apr 3, 2024

  • Upgrades to aind-data-schema == 0.31.17
  • Adds neuropixels related etls for rig jsons

mochic added 30 commits February 26, 2024 14:13
@mochic
initial, with old test data
f8b5e1c
@mochic
update rig ids according to expectations
e80664d
@mochic
remove unnecessary import
87fa644
@mochic
ignore type errors
9028b0f
@mochic
add water calibration
cbeab31
@mochic
dont fail on version detection
6eec64b
@mochic
fix test
b4674d8
@mochic
add file reading into etls
085c086
@mochic
more flexible dynamic routing task etl
6403627
@mochic
add testcase for unsupported dr task
f5a4997
@mochic
logging
7f97ff4
@mochic
reduce logging for expected exception
001524c
@mochic
add probe inferrence for mislabelled open ephys files
b09d3b4
@mochic
update aind-data-schema-version
5fb9ecf
@mochic
update aind-data-schema version
e332be4
@mochic
update for new structure
16ac215
@mochic
temp
34c068a
@mochic
temp
9208424
@mochic
temp
9c9a296
@mochic
temp
7dcb9db
@mochic
refactors
8d1ea5d
@mochic
dont override base camera settings
70467e5
@mochic
refactor mvr etl
1b75e93
@mochic
refactor sync etl
85e3851
@mochic
refactor
46a6674
@mochic
utils documentation
f8987f3
@mochic
resolve merge conflict
4385bff
@mochic
update aind-data-schema version
d8c16e4
@mochic
refactor and fix tests
76c9d2c
@mochic
remove rig_id updating utility
a96b94e
mochic added 23 commits April 3, 2024 17:42
@mochic
pin pydantic version
a063c53
@mochic
pin pydantic, unpin pydantic-settings
3261336
@mochic
compare models
5b6bd62
@mochic
use model_dump_json to maintain order?
76f3441
@mochic
linting
a174c46
@mochic
use model_dump instead
c609726
@mochic
deterministic ordering
89a3429
@mochic
remove tzinfo from mesoscope tests
802578c
@mochic
remove tzinfo from mesoscope
ccc894a
@mochic
fail tests locally to succeed in ci?
89b9230
@mochic
fix test
8083995
@mochic
temp to test removing check for edgecase
87b7c94
@mochic
clean up cruft
82dc539
@mochic
fix tzinfo patch
845f8fd
@mochic
remove pydantic pin
b421763
@mochic
fix ephys timezones
9a56a55
@mochic
model dump to compare json data not instances of models
9c35d2c
@mochic
dump to json str to fully serialize data
ba691cf
@mochic
properly dump both models
769f557
@mochic
patch end time
4dde73f
@mochic
try comparing different timezone types
221494b
@mochic
fix rig jsons and update aind-data-schema
8195480
@mochic
use UTC for tests
e458aa0
@jtyoung84 jtyoung84 mentioned this pull request Apr 5, 2024
Merged
@mochic mochic closed this Apr 8, 2024
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mochic commented Apr 8, 2024

Continued by a new branch here: #41

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@mochic @jtyoung84