Pipeline tools

An assembly-based pipeline for processing short sequencing reads into industry-standard file formats (e.g., FASTA, BAM, and VCF)
Open source APIs enabling cross-format interoperability (e.g. VCF-to-HML)

DaSH

Home
DaSH 15 (Utrecht) 2024
DaSH 14 (Oklahoma City) 2024
DaSH 13 (Rochester) 2023
DASH VRS (Virtual) 2022
DASSH3 (Virtual) 2020
DASH12 (Virtual) 2022
DASSH4 (Virtual) 2021
DASH11 (Virtual) 2021
DASSH3 (Virtual) 2020
DASH10 (Virtual) 2020
DASH Validation (Minneapolis) 2020
DaSSH 2 (Minneapolis) 2019
DASH9 (Denver) 2019
DASH8 (Baltimore) 2018
DASSH FHIR (Minneapolis) 2018
DASH7 (Utrecht) 2017
DASH IHIWS (Stanford) 2017
DASH6 (Heidelberg) 2017
DASH5 (Berkeley) 2017
DASH4 (Vienna) 2016
DASH3 (Minneapolis) 2016
DASH2 (La Jolla) 2015
DASH1 (Bethesda) 2014
Preparing for the Hackathon
Tool access
- AWS Account Creation and Setup
- Shared Hackathon Server Access
- Tutorial
Tools
- MIRING
- HML
- HML/MIRING Validation
- HL7 FHIR
- HL7 OID Registration
- Gene Feature Enumeration
- GL Service
- Pipeline
- Validation tools
- Public resources
Data
Github help